sctransform: pbmc – R documentation

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pbmc

Peripheral Blood Mononuclear Cells (PBMCs)

Description

UMI counts for a subset of cells freely available from 10X Genomics

Usage

pbmc

Format

A sparse matrix (dgCMatrix, see Matrix package) of molecule counts. There are 914 rows (genes) and 283 columns (cells). This is a downsampled version of a 3K PBMC dataset available from 10x Genomics.

Source

https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k

sctransform

Variance Stabilizing Transformations for Single Cell UMI Data

v0.3.2

GPL-3 | file LICENSE

Authors

Christoph Hafemeister [aut, cre] (<https://orcid.org/0000-0001-6365-8254>)

Initial release