Add minimal medium of an organism to arena.
The generic function addEssentialMed uses flux variability analysis to determine a essential growth medium components.
addEssentialMed(object, org, only_return = FALSE, limit = 10) ## S4 method for signature 'Arena' addEssentialMed(object, org, only_return = FALSE, limit = 10)
object |
An object of class Arena. |
org |
An object of class Organism |
only_return |
Set true if essential metabolites should only be returned but not added to arena |
limit |
A metabolite is considered as essential if its remove whould decrease biomass growth below limit (between 0,100; default 10%) |
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