Change organisms in the environment
The generic function changeOrg changes organisms in the environment.
changeOrg(object, neworgdat) ## S4 method for signature 'Arena' changeOrg(object, neworgdat)
object |
An object of class Arena. |
neworgdat |
A data frame with new information about the accumulated biomass, type, phenotype, x and y position for each individual in the environment. |
The argument neworgdat contains the same information as the orgdat slot of Arena-class. The orgdat slot of an Arena object can be used to create neworgdat.
Arena-class and addOrg
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
neworgdat <- arena@orgdat #get the current orgdat
neworgdat <- neworgdat[-1,] #remove the first individual
arena <- changeOrg(arena,neworgdat)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.