Function to show correlations of a simulated organism or substrate
The generic function checkCorr returns the correlation matrix of several objects.
checkCorr(object, corr = NULL, tocheck = list()) ## S4 method for signature 'Eval' checkCorr(object, corr = NULL, tocheck = list())
object |
An object of class Eval. |
corr |
A correlation matrix ( |
tocheck |
A list with substrate, reactions or organism names whose correlations should be shown |
Returns correlation matrix which can be used for statistical analysis
Eval-class and getCorrM
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
checkCorr(eval, tocheck="o2")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.