BacArena: checkPhen_par – R documentation

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checkPhen_par

Function for checking phenotypes in the environment

The generic function checkPhen_par checks and adds the phenotypes of organisms in the environment.

checkPhen_par(object, org, cutoff = 1e-06, fbasol)

## S4 method for signature 'Arena'
checkPhen_par(object, org, cutoff = 1e-06, fbasol)

`object`	An object of class Arena.
`org`	An object of class Organism.
`cutoff`	A number giving the cutoff for values of the objective function and fluxes of exchange reactions.
`fbasol`	Problem object according to the constraints and then solved with `optimizeProb`.

Modeling Framework for Cellular Communities in their Environments

v1.8.2

GPL-3 | file LICENSE

Authors

Eugen Bauer [aut], Johannes Zimmermann [aut, cre]

Initial release