Function for re-constructing an Arena object from a simulation step
The generic function getArena re-constructs an Arena object from a simulation step within an Eval object.
getArena(object, time = (length(object@medlist) - 1)) ## S4 method for signature 'Eval' getArena(object, time = (length(object@medlist) - 1))
object |
An object of class Eval. |
time |
A number giving the simulation step of interest. |
The function addEval can be used to manipulate an Arena object from a simulation step to modify the subsequent simulation steps.
Returns an object of class Arena containing the organisms and substance conditions in simulation step time.
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
arena5 <- getArena(eval,5)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.