BacArena: plotAbundance – R documentation

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plotAbundance

Plot abundances of species

The function plotAbundance takes a list of simulations and return a boxplot with species abundances

plotAbundance(
  simlist,
  time = c(NULL, NULL),
  col = colpal3,
  return_dat = F,
  use_biomass = F
)

`simlist`	A list of simulations (eval objects).
`time`	A vector with start and end time to be considered (default: total time)
`col`	Vector with color that should be used
`return_dat`	Should plain text mean abundances be returned? (default false)
`use_biomass`	If enabled then biomass is used instead of cell number

Modeling Framework for Cellular Communities in their Environments

v1.8.2

GPL-3 | file LICENSE

Authors

Eugen Bauer [aut], Johannes Zimmermann [aut, cre]

Initial release