Function for plotting the overall change as curves
The generic function plotCurves plots the growth curves and concentration changes of substances from simulation steps in an Eval object.
plotCurves( object, medplot = object@mediac, retdata = F, remove = F, legend = F, graph = T ) ## S4 method for signature 'Eval' plotCurves( object, medplot = object@mediac, retdata = F, remove = F, legend = F, graph = T )
object |
An object of class Eval. |
medplot |
A character vector giving the name of substances which should be plotted. |
retdata |
A boolean variable indicating if the data used to generate the plots should be returned. |
remove |
A boolean variable indicating if substances, which don't change in their concentration should be removed from the plot. |
legend |
Boolean variable indicating if legend should be plotted |
graph |
True if graphic should be plotted. |
The parameter retdata can be used to access the data used for the returned plots to create own custom plots.
Returns two graphs in one plot: the growth curves and the curves of concentration changes. Optional the data to generate the original plots can be returned.
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
plotCurves(eval)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.