BacArena: plotSubCurve – R documentation

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plotSubCurve

Plot substance curve for several simulations

Description

The function plotSubCurve takes a list of simulations and plots the time course of substances with standard deviation.

Usage

plotSubCurve(
  simlist,
  mediac = NULL,
  time = c(NULL, NULL),
  scol = NULL,
  unit = "mmol",
  ret_data = FALSE,
  num_var = 10,
  useNames = FALSE
)

Arguments

`simlist`	A list of simulations (eval objects).
`mediac`	A vector of substances (if not specified most varying substances will be taken.)
`time`	Vector with two entries defining start and end time.
`scol`	Vector with colors that should be used.
`unit`	Unit for the substances which should be used for plotting (default: mmol)
`ret_data`	Set true if data should be returned
`num_var`	Number of varying substances to be shown (if mediac is not specified)
`useNames`	Use substance names instead of ids

Value

list of three ggplot object for further formating

BacArena

Modeling Framework for Cellular Communities in their Environments

v1.8.2

GPL-3 | file LICENSE

Authors

Eugen Bauer [aut], Johannes Zimmermann [aut, cre]

Initial release