Can be used for simulation of organisms living in
communities (Bauer and Zimmermann (2017) <doi:10.1371/journal.pcbi.1005544>).
Each organism is represented individually and genome scale
metabolic models determine the uptake and release of compounds. Biological
processes such as movement, diffusion, chemotaxis and kinetics are available
along with data analysis techniques.

Modeling Framework for Cellular Communities in their
Environments

package-ubuntu-20.04-r-4.0.5#cran#BacArena-1.8.2

<p>The generic function <code>readMATmod</code> imports matlab cobra models into sybil model files
</p>

<table summary="R argblock"><tr valign="top">
<td><code>file</code></td>
<td>
<p>Full path to matlab model file</p>
</td>
</tr></table>

<p>Returns sybil model object (time needed: bacterial model ~ 10s, recon2 ~ 60s)
</p>

package-ubuntu-20.04-r-4.0.5#cran#BacArena-1.8.2#docs#readMATmod

readMATmod

Description

Usage

Arguments

Details

BacArena

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