Function for reducing the size of an Eval object by collapsing the medium concentrations
The generic function redEval reduces the object size of an Eval object.
redEval(object, time = "all") ## S4 method for signature 'Eval' redEval(object, time = 1:length(object@medlist))
object |
An object of class Eval. |
time |
A number giving the simulation step of interest. |
The function redEval can be used to reduce the size of an Eval object from a simulation step.
Returns an object of class Arena containing the organisms and substance conditions in simulation step time.
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
eval_reduce <- redEval(eval,5)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.