Calculate cell proportions based on single-cell data
Returns proportion of each cell type out of total cells for each individual in the single-cell Expression Set
CalculateSCCellProportions(sc.eset, subject.names, cell.types)
sc.eset |
Expression Set with single-cell data |
subject.names |
A character string. Name of phenoData attribute in sc.eset that indicates individual ID. |
cell.types |
A character string. Name of phenoData attribute in sc.eset that indicates cell type |
sc.props Matrix. Cell proportions with number of cell types rows by number of individuals columns
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.