Generate reference profile for cell types identified in single-cell data
Averages expression within each cell type across all samples to use as reference profile.
GenerateSCReference(sc.eset, cell.types)
sc.eset |
Expression Set with single-cell data |
cell.types |
A character string. Name of phenoData attribute in sc.eset that indicates cell type |
sc.ref Matrix. Reference profile with number of gene rows by number of cell types columns.
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