BisqueRNA: GetOverlappingGenes – R documentation

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GetOverlappingGenes

Find overlapping genes in single-cell data, bulk data, and marker genes

Find overlapping genes in single-cell data, bulk data, and marker genes

GetOverlappingGenes(sc.eset, bulk.eset, markers, verbose)

`sc.eset`	Expression Set with single-cell data
`bulk.eset`	Expression Set with bulk data
`markers`	Character vector. List of relevant marker genes
`verbose`	Boolean. Print logging info

overlapping.genes Character vector. List of genes found in markers and both datasets.

Decomposition of Bulk Expression with Single-Cell Sequencing

v1.0.4

GPL-3

Authors

Brandon Jew [aut, cre], Marcus Alvarez [aut]

Initial release