CellNOptR: CNOdata – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

CNOdata

Get data from a CellNOpt data repository

Description

This function fetch a file from the URL provided (default is http://www.ebi.ac.uk~/cokelaer/cellnopt/data/_downloads) and save it into a temporary file.

You will need Rcurl package to use this function.

Usage

CNOdata(filename, verbose=FALSE, url=NULL)

Arguments

`filename`	a valid filename that can be found in the url
`verbose`	FALSE by default, it prints the path of the temporary file where data has been copied.
`url`	You can overwrite the default URL (http://www.ebi.ac.uk~/cokelaer/cellnopt/data/_downloads) with this argument.

Value

the path of the temporary file where data has been copied.

Author(s)

T. Cokelaer

Examples

## Not run: readSIF(CNOdata("PKN-ToyMMB.sif"))

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

v1.36.0

GPL-3

Authors

T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve, E.Gjerga, A.Gabor

Initial release

2018-11-08