CellNOptR: defaultParameters – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

defaultParameters

Create a list of default parameters

This function provides a list of default parameters including the Genetic Algorithm parameters.

defaultParameters(data=NA, model=NA)

`data`	a CNOlist structure, as created by `makeCNOlist`
`model`	a model structure, as created by `readSIF`, normally pre-processed but that is not a requirement of this function

The list contains the Genetic Algorithm parameter, a verbose option and can be used to store the Data and Model.

params

a list with the fields: data, model, verbose and all default parameters of gaBinaryT1

T. Cokelaer

data(ToyModel, package="CellNOptR")
data(CNOlistToy, package="CellNOptR")
params = defaultParameters(CNOlistToy, ToyModel)

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

v1.36.0

GPL-3

Authors

T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve, E.Gjerga, A.Gabor

Initial release

2018-11-08