CellNOptR: invokeCPLEX – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

invokeCPLEX

Solving the ILP problem with CPLEX.

Description

This function takes as an input the file name where we write the ILP formulation together with CPLEX parameters and then solves the ILP problem.

Usage

invokeCPLEX <- function(inputFileName, 
                        outputFileName, 
                        mipGap=mipGap, 
                        relGap = relGap, 
                        timelimit=timelimit, 
                        cplexPath = cplexPath, 
                        numSolutions = numSolutions, 
                        limitPop = limitPop, 
                        poolIntensity = poolIntensity, 
                        poolReplace = poolReplace)

Arguments

`inputFileName`	the file name where the cplex ilp problem is stored
`outputFileName`	the file name where to store the cplex result
`mipGap`	the mipgap
`relGap`	the relGap
`timelimit`	the timelimit
`cplexPath`	the cplex solver path
`numSolutions`	the number of desired solutions
`limitPop`	the limitPop
`poolIntensity`	the poolIntensity
`poolReplace`	the poolReplace

Author(s)

E Gjerga, H Koch

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

v1.36.0

GPL-3

Authors

T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve, E.Gjerga, A.Gabor

Initial release

2018-11-08