CellNOptR: writeSIF – R documentation

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writeSIF

Convert a model into a SIF format and save the result in a file.

Description

This function takes as input a model (as created by e.g., read from a SIF data set with readSIF function) and save it into a file.

Usage

writeSIF(model, filename,  overwrite = FALSE)

Arguments

`model`	the model
`filename`	the filename
`overwrite`	by default, do not overwrite a file.

Author(s)

T Cokelaer

Examples

cpfile<-dir(system.file("ToyModel",package="CellNOptR"),full=TRUE)
file.copy(from=cpfile,to=getwd(),overwrite=TRUE)
ToyModel<-readSIF(sifFile="ToyPKNMMB.sif")
writeSIF(ToyModel, "ToyPKNMMB_copy.sif")

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

v1.36.0

GPL-3

Authors

T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve, E.Gjerga, A.Gabor

Initial release

2018-11-08