CellNOptR: createILPBitstringAll – R documentation

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createILPBitstringAll

Reading the optimal solutions as bitstrings.

Description

This function takes as the cplex optimization results and the variables assigned to each interaction in the ILP formulation in order to read the optimal bitstring.

Usage

createILPBitstringAll<- function(cplexSolutionFileName,
                                 y_vector,
                                 binary_variables)

Arguments

`cplexSolutionFileName`	the file name where the cplex results are stored
`y_vector`	the variables for each interaction in the PKN
`binary_variables`	the binary variables of the ILP formulation

Author(s)

E Gjerga, H Koch

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

v1.36.0

GPL-3

Authors

T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve, E.Gjerga, A.Gabor

Initial release

2018-11-08