CellNOptR: plotCNOlist2 – R documentation

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plotCNOlist2

Another version of plotCNOlist that allows to plot 2 cnolist in the same layout to compare them. This function uses ggplot2 library. It is recommended for small data sets (about 15 species).

Description

This function plots the data in a CNOlist as a matrix of plots with a row for each condition and a column for each signal, Cues are simply represented by a number.

Usage

plotCNOlist2(cnolist, simulated_cnolist=NULL, ymin=0,ymax=1)

Arguments

`cnolist`	a CNOlist
`simulated_cnolist`	another cnolist
`ymin`	Change the lower y-limit (default is 0)
`ymax`	Change the lower y-limit (default is 1)

Details

This function can plot either a single CNOlist, or 2 on top of each other.

Author(s)

T. Cokelaer

Examples

# this data set is not an object so we need to convert it
data(CNOlistToy,package="CellNOptR")
cnolist = CNOlist(CNOlistToy)
plotCNOlist2(cnolist)

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

v1.36.0

GPL-3

Authors

T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve, E.Gjerga, A.Gabor

Initial release

2018-11-08