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R
ChIPseeker

getGenomicAnnotation

getGenomicAnnotation

Description

get Genomic Annotation of peaks

Usage

getGenomicAnnotation(
  peaks,
  distance,
  tssRegion = c(-3000, 3000),
  TxDb,
  level,
  genomicAnnotationPriority,
  sameStrand = FALSE
)

Arguments

peaks

peaks in GRanges object
distance

distance of peak to TSS
tssRegion

tssRegion, default is -3kb to +3kb
TxDb

TxDb object
level

one of gene or transcript
genomicAnnotationPriority

genomic Annotation Priority
sameStrand

whether annotate gene in same strand

Value

character vector

Author(s)

G Yu

ChIPseeker

ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

v1.26.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Yun Yan [ctb], Hervé Pagès [ctb], Michael Kluge [ctb], Thomas Schwarzl [ctb], Zhougeng Xu [ctb]
Initial release

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