ChIPseeker: getPromoters – R documentation

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getPromoters

Description

prepare the promoter regions

Usage

getPromoters(TxDb = NULL, upstream = 1000, downstream = 1000, by = "gene")

Arguments

`TxDb`	TxDb
`upstream`	upstream from TSS site
`downstream`	downstream from TSS site
`by`	one of gene or transcript

Value

GRanges object

ChIPseeker

ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

v1.26.2

Artistic-2.0

Authors

Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Yun Yan [ctb], Hervé Pagès [ctb], Michael Kluge [ctb], Thomas Schwarzl [ctb], Zhougeng Xu [ctb]

Initial release