ChIPseeker: getTagMatrix – R documentation

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getTagMatrix

Description

calculate the tag matrix

Usage

getTagMatrix(peak, weightCol = NULL, windows, flip_minor_strand = TRUE)

Arguments

`peak`	peak file or GRanges object
`weightCol`	column name of weight, default is NULL
`windows`	a collection of region with equal size, eg. promoter region.
`flip_minor_strand`	whether flip the orientation of minor strand

Value

tagMatrix

ChIPseeker

ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

v1.26.2

Artistic-2.0

Authors

Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Yun Yan [ctb], Hervé Pagès [ctb], Michael Kluge [ctb], Thomas Schwarzl [ctb], Zhougeng Xu [ctb]

Initial release