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peakHeatmap

peakHeatmap

Description

plot the heatmap of peaks align to flank sequences of TSS

Usage

peakHeatmap(
  peak,
  weightCol = NULL,
  TxDb = NULL,
  upstream = 1000,
  downstream = 1000,
  xlab = "",
  ylab = "",
  title = NULL,
  color = NULL,
  verbose = TRUE
)

Arguments

peak

peak file or GRanges object
weightCol

column name of weight
TxDb

TxDb object
upstream

upstream position
downstream

downstream position
xlab

xlab
ylab

ylab
title

title
color

color
verbose

print message or not

Value

figure

Author(s)

G Yu

ChIPseeker

ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

v1.26.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Yun Yan [ctb], Hervé Pagès [ctb], Michael Kluge [ctb], Thomas Schwarzl [ctb], Zhougeng Xu [ctb]
Initial release

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