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plotAvgProf

plotAvgProf

Description

plot the profile of peaks

Usage

plotAvgProf(
  tagMatrix,
  xlim,
  xlab = "Genomic Region (5'->3')",
  ylab = "Peak Count Frequency",
  conf,
  facet = "none",
  free_y = TRUE,
  ...
)

Arguments

tagMatrix

tagMatrix or a list of tagMatrix
xlim

xlim
xlab

x label
ylab

y label
conf

confidence interval
facet

one of 'none', 'row' and 'column'
free_y

if TRUE, y will be scaled by AvgProf
...

additional parameter

Value

ggplot object

Author(s)

G Yu; Y Yan

ChIPseeker

ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

v1.26.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Yun Yan [ctb], Hervé Pagès [ctb], Michael Kluge [ctb], Thomas Schwarzl [ctb], Zhougeng Xu [ctb]
Initial release

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