plotAvgProf
plot the profile of peaks that align to flank sequences of TSS
plotAvgProf2( peak, weightCol = NULL, TxDb = NULL, upstream = 1000, downstream = 1000, xlab = "Genomic Region (5'->3')", ylab = "Peak Count Frequency", conf, facet = "none", free_y = TRUE, verbose = TRUE, ... )
peak |
peak file or GRanges object |
weightCol |
column name of weight |
TxDb |
TxDb object |
upstream |
upstream position |
downstream |
downstream position |
xlab |
xlab |
ylab |
ylab |
conf |
confidence interval |
facet |
one of 'none', 'row' and 'column' |
free_y |
if TRUE, y will be scaled by AvgProf |
verbose |
print message or not |
... |
additional parameter |
ggplot object
G Yu
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.