plotDistToTSS.data.frame
plot feature distribution based on the distances to the TSS
plotDistToTSS.data.frame( peakDist, distanceColumn = "distanceToTSS", xlab = "", ylab = "Binding sites (%) (5'->3')", title = "Distribution of transcription factor-binding loci relative to TSS", categoryColumn )
peakDist |
peak annotation |
distanceColumn |
column name of the distance from peak to nearest gene |
xlab |
x label |
ylab |
y lable |
title |
figure title |
categoryColumn |
category column |
bar plot that summarize distance from peak to TSS of the nearest gene.
Guangchuang Yu https://guangchuangyu.github.io
## Not run:
require(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
peakfile <- system.file("extdata", "sample_peaks.txt", package="ChIPseeker")
peakAnno <- annotatePeak(peakfile, TxDb=txdb)
plotDistToTSS(peakAnno)
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.