ChIPseeker: readPeakFile – R documentation

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readPeakFile

Description

read peak file and store in data.frame or GRanges object

Usage

readPeakFile(peakfile, as = "GRanges", ...)

Arguments

`peakfile`	peak file
`as`	output format, one of GRanges or data.frame
`...`	additional parameter

Value

peak information, in GRanges or data.frame object

Author(s)

G Yu

Examples

peakfile <- system.file("extdata", "sample_peaks.txt", package="ChIPseeker")
peak.gr <- readPeakFile(peakfile, as="GRanges")
peak.gr

ChIPseeker

ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

v1.26.2

Artistic-2.0

Authors

Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Yun Yan [ctb], Hervé Pagès [ctb], Michael Kluge [ctb], Thomas Schwarzl [ctb], Zhougeng Xu [ctb]

Initial release