ChIPseeker: seq2gene – R documentation

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seq2gene

Description

annotate genomic regions to genes in many-to-many mapping

Usage

seq2gene(seq, tssRegion, flankDistance, TxDb, sameStrand = FALSE)

Arguments

`seq`	genomic regions in GRanges object
`tssRegion`	TSS region
`flankDistance`	flanking search radius
`TxDb`	TranscriptDb object
`sameStrand`	logical whether find nearest/overlap gene in the same strand

Value

gene vector

Author(s)

Guangchuang Yu

ChIPseeker

ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

v1.26.2

Artistic-2.0

Authors

Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Yun Yan [ctb], Hervé Pagès [ctb], Michael Kluge [ctb], Thomas Schwarzl [ctb], Zhougeng Xu [ctb]

Initial release