vennplot
plot the overlap of a list of object
vennplot(Sets, by = "gplots")
Sets |
a list of object, can be vector or GRanges object |
by |
one of gplots or Vennerable |
venn plot that summarize the overlap of peaks from different experiments or gene annotation from different peak files.
G Yu
## example not run ## require(TxDb.Hsapiens.UCSC.hg19.knownGene) ## txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene ## peakfiles <- getSampleFiles() ## peakAnnoList <- lapply(peakfiles, annotatePeak) ## names(peakAnnoList) <- names(peakfiles) ## genes= lapply(peakAnnoList, function(i) as.data.frame(i)$geneId) ## vennplot(genes)
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