Density Annotation
Density Annotation
anno_density(x, which = c("column", "row"),
type = c("lines", "violin", "heatmap"), xlim = NULL,
heatmap_colors = rev(brewer.pal(name = "RdYlBu", n = 11)),
joyplot_scale = 1, border = TRUE, gp = gpar(fill = "#CCCCCC"),
axis = TRUE, axis_param = default_axis_param(which),
width = NULL, height = NULL)x |
A matrix or a list. If |
which |
Whether it is a column annotation or a row annotation? |
type |
Type of graphics to represent density distribution. "lines" for normal density plot; "violine" for violin plot and "heatmap" for heatmap visualization of density distribution. |
xlim |
Range on x-axis. |
heatmap_colors |
A vector of colors for interpolating density values. |
joyplot_scale |
Relative height of density distribution. A value higher than 1 increases the height of the density distribution and the plot will represented as so-called "joyplot". |
border |
Wether draw borders of the annotation region? |
gp |
Graphic parameters for the boxes. The length of the graphic parameters should be one or the number of observations. |
axis |
Whether to add axis? |
axis_param |
parameters for controlling axis. See |
width |
Width of the annotation. The value should be an absolute unit. Width is not allowed to be set for column annotation. |
height |
Height of the annotation. The value should be an absolute unit. Height is not allowed to be set for row annotation. |
An annotation function which can be used in HeatmapAnnotation.
m = matrix(rnorm(100), 10)
anno = anno_density(m, which = "row")
draw(anno, test = "normal density")
anno = anno_density(m, which = "row", type = "violin")
draw(anno, test = "violin")
anno = anno_density(m, which = "row", type = "heatmap")
draw(anno, test = "heatmap")
anno = anno_density(m, which = "row", type = "heatmap",
heatmap_colors = c("white", "orange"))
draw(anno, test = "heatmap, colors")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.