DAAG: rice – R documentation

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rice

Genetically Modified and Wild Type Rice Data

Description

The rice data frame has 72 rows and 7 columns. The data are from an experiment that compared wild type (wt) and genetically modified rice plants (ANU843), each with three different chemical treatments (F10, NH4Cl, and NH4NO3).

Usage

rice

Format

This data frame contains the following columns:

PlantNo: a numeric vector
Block: a numeric vector
RootDryMass: a numeric vector
ShootDryMass: a numeric vector
trt: a factor with levels F10, NH4Cl, NH4NO3, F10 +ANU843, NH4Cl +ANU843, NH4NO3 +ANU843
fert: a factor with levels F10 NH4Cl NH4NO3
variety: a factor with levels wt ANU843

Source

Perrine, F.M., Prayitno, J., Weinman, J.J., Dazzo, F.B. and Rolfe, B. 2001. Rhizobium plasmids are involved in the inhibition or stimulation of rice growth and development. Australian Journal of Plant Physiology 28: 923-927.

Examples

print("One and Two-Way Comparisons - Example 4.5")
attach(rice)
oldpar <- par(las = 2)
stripchart(ShootDryMass ~ trt, pch=1, cex=1, xlab="Level of factor 1")
detach(rice)
pause()

rice.aov <- aov(ShootDryMass ~ trt, data=rice); anova(rice.aov)
anova(rice.aov)
pause()

summary.lm(rice.aov)$coef
pause()

rice$trt <- relevel(rice$trt, ref="NH4Cl")
  # Set NH4Cl as the baseline

fac1 <- factor(sapply(strsplit(as.character(rice$trt)," \\+"), function(x)x[1]))
anu843 <- sapply(strsplit(as.character(rice$trt), "\\+"), 
function(x)c("wt","ANU843")[length(x)])
anu843 <- factor(anu843, levels=c("wt", "ANU843"))
attach(rice)
interaction.plot(fac1, anu843, ShootDryMass)
detach(rice)
par(oldpar)

DAAG

Data Analysis and Graphics Data and Functions

v1.24

GPL-3

Authors

John H. Maindonald and W. John Braun

Initial release