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ENMeval

Automated Runs and Evaluations of Ecological Niche Models

Automatically partitions data into evaluation bins, executes ecological niche models across a range of settings, and calculates a variety of evaluation statistics. Current version only implements ENMs with Maxent (Phillips et al. 2006) or maxnet (Phillips et al. 2017).

Functions (13)

ENMeval-package

Automated runs and evaluations of ecological niche models

ENMevaluate

Tuning and evaluation of ENMs with Maxent

ENMevaluation-class

Class "ENMevaluation"

calc.aicc

Calculate AICc from Maxent model prediction

calc.niche.overlap

Calculate Similarity of ENMs in Geographic Space

corrected.var

Calculate variance corrected for non-independence of k-fold iterations

enmeval_results

An object of class "ENMevaluation"

eval.plot

Generate Basic Plot for ENMevaluate Output

eval2

An object of class "ENMevaluation"

get.evaluation.bins

Methods to partition data for evaluation

make.args

Generate arguments for Maxent

maxnet.functions

Functions for compatability with maxnet package

var.importance

Extract percent contribution and permutation importance from a Maxent model

ENMeval

Automated Runs and Evaluations of Ecological Niche Models

v0.3.1
GPL
Authors
Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Uriarte and Robert P. Anderson
Initial release
2020-09-08

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