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EstimateR

Function to ensure compatibility with EpiEstim versions <2.0

Description

Please only use for compatibility; Prefer the new estimate_R function instead

Usage

EstimateR(
  I,
  T.Start,
  T.End,
  method = c("NonParametricSI", "ParametricSI", "UncertainSI"),
  n1 = NULL,
  n2 = NULL,
  Mean.SI = NULL,
  Std.SI = NULL,
  Std.Mean.SI = NULL,
  Min.Mean.SI = NULL,
  Max.Mean.SI = NULL,
  Std.Std.SI = NULL,
  Min.Std.SI = NULL,
  Max.Std.SI = NULL,
  SI.Distr = NULL,
  Mean.Prior = 5,
  Std.Prior = 5,
  CV.Posterior = 0.3,
  plot = FALSE,
  leg.pos = "topright"
)

Arguments

I

see incid in estimate_R
T.Start

see config$t_start in estimate_R
T.End

see config$t_end in estimate_R
method

see method in estimate_R (but EstimateR uses CamelCase where estimate_R uses snake_case for the method names)
n1

see n1 in estimate_R
n2

see n2 in estimate_R
Mean.SI

see config$mean_si in estimate_R
Std.SI

see config$std_si in estimate_R
Std.Mean.SI

see config$std_mean_si in estimate_R
Min.Mean.SI

see config$min_mean_si in estimate_R
Max.Mean.SI

see config$max_mean_si in estimate_R
Std.Std.SI

see config$std_std_si in estimate_R
Min.Std.SI

see config$min_std_si in estimate_R
Max.Std.SI

see config$max_std_si in estimate_R
SI.Distr

see config$si_distr in estimate_R
Mean.Prior

see config$mean_prior in estimate_R
Std.Prior

see config$std_prior in estimate_R
CV.Posterior

see config$cv_posterior in estimate_R
plot

Not used anymore, only there for compatibility
leg.pos

Not used anymore, only there for compatibility
EpiEstim

Estimate Time Varying Reproduction Numbers from Epidemic Curves

v2.2-4
GPL (>= 2)
Authors
Anne Cori [aut, cre] (<https://orcid.org/0000-0002-8443-9162>), Simon Cauchemez [ctb], Neil M. Ferguson [ctb] (<https://orcid.org/0000-0002-1154-8093>), Christophe Fraser [ctb] (<https://orcid.org/0000-0003-2399-9657>), Elisabeth Dahlqwist [ctb] (<https://orcid.org/0000-0001-5797-6803>), P. Alex Demarsh [ctb], Thibaut Jombart [ctb] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>), Justin Lessler [ctb] (<https://orcid.org/0000-0002-9741-8109>), Shikun Li [ctb], Jonathan A. Polonsky [ctb] (<https://orcid.org/0000-0002-8634-4255>), Jake Stockwin [ctb], Robin Thompson [ctb] (<https://orcid.org/0000-0001-8545-5212>), Rolina van Gaalen [ctb]
Initial release

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