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WT

Function to ensure compatibility with EpiEstim versions <2.0

Description

Please only use for compatibility; Prefer the new wallinga_teunis function instead

Usage

WT(
  I,
  T.Start,
  T.End,
  method = c("NonParametricSI", "ParametricSI"),
  Mean.SI = NULL,
  Std.SI = NULL,
  SI.Distr = NULL,
  nSim = 10,
  plot = FALSE,
  leg.pos = "topright"
)

Arguments

I

see incid in wallinga_teunis
T.Start

see config$t_start in wallinga_teunis
T.End

see config$t_end in wallinga_teunis
method

see method in wallinga_teunis (but WT uses CamelCase where wallinga_teunis uses snake_case for the method names)
Mean.SI

see config$mean_si in wallinga_teunis
Std.SI

see config$std_si in wallinga_teunis
SI.Distr

see config$si_distr in wallinga_teunis
nSim

see config$n_sim in wallinga_teunis
plot

Not used anymore, only there for compatibility
leg.pos

Not used anymore, only there for compatibility
EpiEstim

Estimate Time Varying Reproduction Numbers from Epidemic Curves

v2.2-4
GPL (>= 2)
Authors
Anne Cori [aut, cre] (<https://orcid.org/0000-0002-8443-9162>), Simon Cauchemez [ctb], Neil M. Ferguson [ctb] (<https://orcid.org/0000-0002-1154-8093>), Christophe Fraser [ctb] (<https://orcid.org/0000-0003-2399-9657>), Elisabeth Dahlqwist [ctb] (<https://orcid.org/0000-0001-5797-6803>), P. Alex Demarsh [ctb], Thibaut Jombart [ctb] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>), Justin Lessler [ctb] (<https://orcid.org/0000-0002-9741-8109>), Shikun Li [ctb], Jonathan A. Polonsky [ctb] (<https://orcid.org/0000-0002-8634-4255>), Jake Stockwin [ctb], Robin Thompson [ctb] (<https://orcid.org/0000-0001-8545-5212>), Rolina van Gaalen [ctb]
Initial release

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