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epPCA

epPCA: Principal Component Analysis (PCA) via ExPosition.

Description

Principal Component Analysis (PCA) via ExPosition.

Usage

epPCA(DATA, scale = TRUE, center = TRUE, DESIGN = NULL, make_design_nominal = TRUE, 
	graphs = TRUE, k = 0)

Arguments

DATA

original data to perform a PCA on.
scale

a boolean, vector, or string. See expo.scale for details.
center

a boolean, vector, or string. See expo.scale for details.
DESIGN

a design matrix to indicate if rows belong to groups.
make_design_nominal

a boolean. If TRUE (default), DESIGN is a vector that indicates groups (and will be dummy-coded). If FALSE, DESIGN is a dummy-coded matrix.
graphs

a boolean. If TRUE (default), graphs and plots are provided (via epGraphs)
k

number of components to return.

Details

epPCA performs principal components analysis on a data matrix.

Value

See corePCA for details on what is returned.

Author(s)

Derek Beaton

References

Abdi, H., and Williams, L.J. (2010). Principal component analysis. Wiley Interdisciplinary Reviews: Computational Statistics, 2, 433-459.
Abdi, H. (2007). Singular Value Decomposition (SVD) and Generalized Singular Value Decomposition (GSVD). In N.J. Salkind (Ed.): Encyclopedia of Measurement and Statistics.Thousand Oaks (CA): Sage. pp. 907-912.

See Also

Examples

data(words)
	pca.words.res <- epPCA(words$data)
ExPosition

Exploratory Analysis with the Singular Value Decomposition

v2.8.23
GPL-2
Authors
Derek Beaton, Cherise R. Chin Fatt, Herve Abdi
Initial release
2018-12-27

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