MMC plots in lattice—suppress isomeans grid lines for specified levels of the factor.
MMC plots in lattice—suppress isomeans grid lines for specified levels of the factor.
mmcPruneIsomeans(mmc, keep=NULL)
mmc |
An |
keep |
Index vector of rows of |
A modified "mmc.multicomp"
object.
## needed ## Not run: ## See file hh/scripts/hh2/tway.R for the complete example. ## A better example is needed for the .Rd documentation. ## possibly based on filmcoat temperature | pressure example. data(rhiz.clover) c(1,2,5,10,11,12) rhiz.clover$cs <- with(rhiz.clover, interaction(comb, strain)) rhiz.clover.cs.aov <- aov(Npg ~ cs, data=rhiz.clover) rhiz.clover.cs.aov cs.mmc <- mmc(rhiz.clover.cs.aov, linfct=mcp(cs="Tukey"), calpha=qtukey( .95, 6, 48)/sqrt(2)) dlmat2 <- dimnames(cs.mmc$mca$lmat)[[2]] cl.index <- grep("clover\\.[[:print:]]*clover\\.", dlmat2, value=TRUE) cl.index clover.lmat <- cs.mmc$mca$lmat[, cl.index] ## suppress "clover+alfalfa" contrasts dimnames(clover.lmat)[[1]] dimnames(clover.lmat)[[1]] <- levels(rhiz.clover$cs) clover.lmat[1,] <- -colSums(clover.lmat[-1, ]) clover.lmat csc.mmc <- mmc(rhiz.clover.cs.aov, linfct=mcp(cs="Tukey"), focus.lmat=clover.lmat, calpha=qtukey( .95, 6, 48)/sqrt(2)) ## this example needs a window 11 inches high and 14 inches wide mmcplot(csc.mmc, type="lmat", style="both") ## suppress "clover+alfalfa" means csc.mmc.clover <- mmcPruneIsomeans(csc.mmc, keep = c(1,2,5,10,11,12)) csc.mmc.clover ## this example needs a window 11 inches high and 14 inches wide mmcplot(csc.mmc.clover, type="lmat", style="both") ## End(Not run)
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