ICAMS: AddDBSClass – R documentation

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AddDBSClass

Add DBS mutation class to an annotated DBS VCF

Description

Add DBS mutation class to an annotated DBS VCF

Usage

AddDBSClass(vcf)

Arguments

vcf

An in-memory VCF file annotated with sequence context and transcript information by function AnnotateDBSVCF. It must *not* contain indels and must *not* contain SBS (single base substitutions), or triplet base substitutions etc.

Value

The original vcf with three additional columns DBS78.class, DBS136.class and DBS144.class added.

ICAMS

In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

v2.3.10

GPL-3 | file LICENSE

Authors

Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu, Yang Wu

Initial release