ICAMS: AddSBSClass – R documentation

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AddSBSClass

Add SBS mutation class to an annotated SBS VCF

Description

Add SBS mutation class to an annotated SBS VCF

Usage

AddSBSClass(vcf)

Arguments

vcf

An in-memory VCF file annotated with sequence context and transcript information by function AnnotateSBSVCF. It must *not* contain indels and must *not* contain DBS (double base substitutions), or triplet base substitutions etc., even if encoded as neighboring SBS.

Value

The original vcf with three additional columns SBS96.class, SBS192.class and SBS1536.class added.

ICAMS

In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

v2.3.10

GPL-3 | file LICENSE

Authors

Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu, Yang Wu

Initial release