ICAMS: AddTranscript – R documentation

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AddTranscript

Add transcript information to a data frame with mutation records

Add transcript information to a data frame with mutation records

AddTranscript(df, trans.ranges = NULL, ref.genome, name.of.VCF = NULL)

`df`	A data frame storing mutation records of a VCF file.
`trans.ranges`	A `data.table` which contains transcript range and strand information. Please refer to `TranscriptRanges` for more details.
`ref.genome`	A `ref.genome` argument as described in `ICAMS`.
`name.of.VCF`	Name of the VCF file.

A data frame with new columns added to the input data frame, which contain the mutated gene's name, range and strand information.

In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

v2.3.10

GPL-3 | file LICENSE

Authors

Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu, Yang Wu

Initial release