Given a single insertion or deletion in context categorize it.
Given a single insertion or deletion in context categorize it.
Canonicalize1ID(context, ref, alt, pos, trace = 0)
context |
Ample surrounding sequence on each side of the insertion or deletion. |
ref |
The reference allele (vector of length 1) |
alt |
The alternative allele (vector of length 1) |
pos |
The position of |
trace |
If > 0, then generate messages tracing how the computation is carried out. |
A string that is the canonical representation
of the type of the given
insertion or deletion.
Return NA
and raise a warning if
there is an un-normalized representation of
the deletion of a repeat unit.
See FindDelMH for details.
(This seems to be very rare.)
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