ICAMS: Canonicalize1INS – R documentation

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Canonicalize1INS

Given an insertion and its sequence context, categorize it.

Given an insertion and its sequence context, categorize it.

Canonicalize1INS(context, ins.sequence, pos, trace = 0)

`context`	The deleted sequence plus ample surrounding sequence on each side (at least as long as `ins.sequence` * 6).
`ins.sequence`	The deleted sequence in `context`.
`pos`	The position of `ins.sequence` in `context`.
`trace`	If > 0, then generate messages tracing how the computation is carried out.

A string that is the canonical representation of the given insertion type.

In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

v2.3.10

GPL-3 | file LICENSE

Authors

Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu, Yang Wu

Initial release