ICAMS: CheckSBSClassInVCF – R documentation

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CheckSBSClassInVCF

Check SBS mutation class in VCF with the corresponding SBS mutation matrix

Check SBS mutation class in VCF with the corresponding SBS mutation matrix

CheckSBSClassInVCF(vcf, mat, sample.id)

`vcf`	An annotated SBS VCF with columns of SBS mutation classes added by `AddSBSClass`.
`mat`	The SBS mutation count matrix.
`sample.id`	Usually the sample id, but defaults to "count".

In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

v2.3.10

GPL-3 | file LICENSE

Authors

Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu, Yang Wu

Initial release