ICAMS: GetConsensusVAF – R documentation

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GetConsensusVAF

Analogous to GetMutectVAF, calculating VAF and read depth from PCAWG7 consensus vcfs

Analogous to GetMutectVAF, calculating VAF and read depth from PCAWG7 consensus vcfs

GetConsensusVAF(vcf, mc.cores = 1)

`vcf`	An in-memory VCF data frame.
`mc.cores`	The number of cores to use. Not available on Windows unless `mc.cores = 1`.

In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

v2.3.10

GPL-3 | file LICENSE

Authors

Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu, Yang Wu

Initial release