ICAMS: InferAbundance – R documentation

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InferAbundance

Infer abundance given a matrix-like object and additional information.

Infer abundance given a matrix-like object and additional information.

InferAbundance(object, ref.genome, region, catalog.type)

`object`	A numeric matrix, numeric data frame, or `catalog`.
`ref.genome`	A `ref.genome` argument as described in `ICAMS`.
`region`	A character string designating a genomic region; see `as.catalog` and `ICAMS`.
`catalog.type`	A character string for `catalog.type` as described in `ICAMS`.

A value that can be set as the abundance attribute of a catalog (which may be NULL if no abundance can be inferred).

In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

v2.3.10

GPL-3 | file LICENSE

Authors

Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu, Yang Wu

Initial release