Split a mutect2 VCF into SBS, DBS, and ID VCFs, plus a list of other mutations
Split a mutect2 VCF into SBS, DBS, and ID VCFs, plus a list of other mutations
SplitOneMutectVCF(vcf.df, name.of.VCF = NULL)
vcf.df |
An in-memory data.frame representing a Mutect VCF, including
VAFs, which are added by |
name.of.VCF |
Name of the VCF file. |
A list with 3 in-memory VCFs and discarded variants that were not incorporated into the first 3 VCFs:
* SBS: VCF with only single base substitutions.
* DBS: VCF with only doublet base substitutions
as called by Mutect.
* ID: VCF with only small insertions and deletions.
* discarded.variants: Non-NULL only if there are variants
that were excluded from the analysis. See the added extra column
discarded.reason for more details.
@md
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.