ICAMS: revc – R documentation

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revc

Reverse complement every string in string.vec

Description

Based on reverseComplement. Handles IUPAC ambiguity codes but not "u" (uracil).
(see <https://en.wikipedia.org/wiki/Nucleic_acid_notation>).

Usage

revc(string.vec)

Arguments

string.vec

A character vector.

Value

A character vector with the reverse complement of every string in string.vec.

Examples

revc("aTgc") # GCAT

# A vector and strings with ambiguity codes
revc(c("ATGC", "aTGc", "wnTCb")) # GCAT GCAT VGANW

## Not run: 
revc("ACGU") # An error
## End(Not run)

ICAMS

In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

v2.3.10

GPL-3 | file LICENSE

Authors

Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu, Yang Wu

Initial release