KOGMWU: kog.mwut – R documentation

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kog.mwut

Mann-Whitney U test for KOG enrichment.

Accessory function to kog.mwu()

kog.mwut(gos, Alternative = "t")

`gos`	A dataframe with three columns, 'seq' (gene id),'term' (KOG class) and 'value' (continuous measure, such as log fold-change).
`Alternative`	Tailedness of the MWU test: two-tailed ("t"), greater-than ("g"), or less-than ("l")

A dataframe with three columns: 'term', 'nseqs', 'delta.rank', 'pval' and 'padj'

Mikhail V. Matz

Dixon GB, Davies SW, Aglyamova GA, Meyer E, Bay LK and Matz MV (2015) Genomic determinants of coral heat tolerance across latitudes.

Functional Summary and Meta-Analysis of Gene Expression Data

v1.2

GPL-3

Authors

Mikhail V. Matz

Initial release

2019-02-19