MSCquartets: simplexPrepare – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

simplexPrepare

Draw 2-d probability simplex, with model lines for T3 or T1 model

Description

Outline the 2-d probability simplex, and draw the T1 or T3 model points for quartet frequencies. The models "T1" and "T3" are described more fully by Mitchell et al. (2019).

Usage

simplexPrepare(model = "T3", maintitle = NULL, titletext = NULL)

Arguments

`model`	`"T1"` or `"T3"`, for 1-tree or 3-tree model
`maintitle`	main title for plot
`titletext`	additional text for title

References

Mitchell J, Allman ES, Rhodes JA (2019). “Hypothesis testing near singularities and boundaries.” Electron. J. Statist., 13(1), 2150–2193. doi: 10.1214/19-EJS1576, https://doi.org/10.1214/19-EJS1576.

Examples

simplexPrepare("T3",maintitle="Main title",titletext="further text")

MSCquartets

Analyzing Gene Tree Quartets under the Multi-Species Coalescent

v1.1.0

MIT + file LICENSE

Authors

Elizabeth Allman [aut], Hector Banos [aut], Jonathan Mitchell [aut], John Rhodes [aut, cre] (<https://orcid.org/0000-0001-9921-1091>)

Initial release