Get and set the number of matches in msgfPar objects
These functions allow you to retrieve and set the number of matches per spectrum returned by MS-GF+
matches(object) matches(object) <- value ## S4 method for signature 'msgfPar' matches(object) ## S4 replacement method for signature 'msgfPar,numeric' matches(object) <- value ## S4 replacement method for signature 'msgfPar,msgfParMatches' matches(object) <- value
object |
An msgfPar object |
value |
Either an integer or an msgfParMatches object |
In case of the getter an integer
msgfPar: Get the number of matches reported per spectrum
object = msgfPar,value = numeric: Set the number of matches reported per spectrum using an
integer
object = msgfPar,value = msgfParMatches: Set the number of matches reported per spectrum using an
msgfParMatches object
Other msgfPar-getter_setter: chargeRange,
db, enzyme,
fragmentation, instrument,
isotopeError, lengthRange,
mods, ntt,
protocol, tda,
tolerance
parameters <- msgfPar(system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta')) matches(parameters) <- 5 matches(parameters)
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